The built-up indexed model or the u-build-it model? I trashed my u-build-it because it did not work out once it was assembled. I motorized the kit and had endless problems with it. I found a partial solution to the bridge binding against parts of the pit wall, and to the wobbles. I also had to modify the centre post assembly to keep the copper wipers in place against their brass rings.
The indexed built-up model is an out-and-out gem, and worth every penny.
You should mock up the interface between the roundhouse and the pit. Place the pit where you would like it to be, keeping clearances and such in mind....what will be around it? Any radial tracks outdoors leading off it besides those inside the roundhouse? Make room. How about landscaping around it? You can do this mockeup with pieces of trimmed cardboard, or invert the pit and do an eyeballing estimate of alignment and distances apart so that you know you are close...before you cut the hole for the turntable! The TT takes up a lot of room, but add a roundhouse, especially a five stall one, and you are taking up one chunk of space. Keep an eye on clearances behind the roundhouse and at its wide corners. Any tracks back there will need proper clearance, particularly with large engines and long passenger cars and such.
Then, place the house so that its centre axis is pointed very closely (essentially directly) at the pivot axis of the bridge, and place disposable, maybe leftover sections of flextrack in the bays. Ideally, it would be good to have their ends abut the stops at the back of the bay channels if your roundhouse has them. Then, line of the tracks with the bridge, moving the bridge to line up with each bay. Adjust the distance between the lip of the pit and the apron at the doors of each bay until you get the best alignment possible. In my case, I elected to trim the outer ties on both outer tracks of my 3-staller so that the flex sections could bow outward with a radial curvature of about 40", maybe 50"...never checked. That gentle curve allowed very nice alignment at the pit inner lip and the bridge rails.
Pay attention to the heights of rails as they meet with the bridge rails atop the lip. I use Code 100, so I felt obliged to Dremel in a shallow groove for each rail on the lip surface. Removing two ties, I glued the rails into those channels, making sure the channels were sufficiently deep to match rail heights with the smaller bridge rails. If you are using Code 83, I'd say you're almost all the way home already in that respect.
If using the built-up model, remember to not fix the pit in place where the electrical gap will interfere with power to the locomotives once the bridge is aligned with the track you place at that orientation, whether to a bay track or one of your outdoor radials. Dont' forget this step...verify once you have it figured out by powering the system temporarily and seeing if the engines keep power to them when they are aligned with all your intended radials.
Any other questions?