Contrary to popular rumor, there is a lot more wrong with Proto GP30s than the axle gears. The good news is you can fix it. Once you have replaced the axle gears, you're finding the loco will barely move, right? This is because the worms are gummed up with that worthless lubricant from the factory. It's a real mess. The motor bearings may be too. The GP30 - especially those made in the first run in 1999 - is the absolute worst of the bunch in terms of this gunking problem.
First take the whole thing apart. Gearboxes, everything. Clean and scrub that peanut butter goo off the gears and inside gearboxes. It is very tenacious... it will take multiple passes with dish detergent and a toothbrush to get it off. Then once you have everything clean and dry, inspection time. The three idler gears in each truck will probably be fine. Your axle gears are new, should be ok. The worm probably has a black plastic thrust bearing on each end. It is probably swollen and gumming up the works. You will need to pull the bearing block off, pull the U-joint off and remove these things and finish cleaning up the worm shaft. There may even be some corrosion on the worm shaft, or just tan or greenish residue from the lube. Get everything clean. Find some bronze thrust washers to replace the gooey ones, and shim it until the worm sets in the gearbox with just a tiny bit of fore-aft play *with* the worm cover snapped on.
Check the motor - if it rotates freely - I mean, it should spin just a bit and not feel binding at all - it's probably ok.
Put everything back together and if you're going to DCC, hard wire the truck pickups from the frame side directly to the decoder rather than jumping it to the giant weight. Throw the factory board away in either case - it has a lighting circuit that sucks a lot of juice from the motor.
I know it's a lot of work for a "new" locomotive, but the alternative is a new GP30 from Walthers for 2x, 3x what you paid. Walthers current production seems fine - I have several of them and they are good runners. Hard to say what 8, 9 years will do to them though. My 1999 GP30s ran ok when new, but were slow due to the light board. After sitting 8 years, they are almost all un-runnable without the tuneup I just described. But it is worth doing and can save you a bunch of $$.
Andy